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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcacgatttaactatccagtatcttaccaagatgttcaaatattattattcatcatgatgactcttactctgattttcagATTCTTGGAAGTGGCATGTCAAACAGGATGTGGGAGACACTTGCAGAGCATTCCAAGACATGTGTATTGAGTGAAATGCTTTACGTCTACTATCCCGAGG

Basic information

species Arabidopsis thaliana
transcript AT2G18750.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os04g36660.1 (Oryza sativa), 3'ss of exon 6
gtgagtgc-acgatttaactatccagtatcttaccaagatgttcaaatattattattcatcatgatgactcttactctga--ttttcagATTCTTGGAAGTGGCATGTCAAACAGGATGTGGGAGACACTTGCAGAGCATTCCAAGACATGTGTATTGAGTGAAATGCTTTACGTCTACTATCCCGAGG
|| |||   |  |||   || |  |   | |    |  || ||      |||  | | |   |      ||||  |||||  ||||||||||||||| |||  ||||||||| | ||||||||| |  ||||  |||||| | ||||||||||| |||||||  |  |  ||  | || ||  |    |
gtaagtcttattattcctctttgtaacttatattaagaattttgtttctttaaaactaaaatttggttttcttcttctgatattttcagATTCTTGGCAGTAACATGTCAAATAAGATGTGGGAAAGTCTTGTTGAGCATGCGAAGACATGTGTTTTGAGTGGCAAACACTATATATATTACTCAAGCG

upper sequence: AT2G18750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EFJ34469 (Selaginella moellendorffii), 3'ss of exon 5
gtgagtgcacgatttaactatccagtatcttaccaagatgttcaaatattattattcatcatgatgactcttactctgatttt----cagATTCTTGGAAGTGGCATGTCAAACAGGATGTGGGAGACACTTGCAGAGCATTCCAAGACATGTGTATTGAGTGAAATGCTTTACGTCTACTATCCCGAGG
                        |||  | |  ||  |       |  | |   ||    ||    ||| |    |   | |    |||||||||||||||||||||||||| | |||||||||   |   |  |||||| | || || || ||  | || | || ||| || ||||| ||| |||| |
------------------------gtaagtaatgaaagttagttttttctttctctctctctgtcagctcatgtagttggtctggcgcagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCATGCTAAAACGTGCGTCCTCAGCGGAAAGCTGTATGTCTATTATGCCGACG

upper sequence: AT2G18750.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EFJ05811 (Selaginella moellendorffii), 3'ss of exon 5
gtgagtgcacgatttaactatccagtatcttaccaagatgttcaaatattattattcatcatgatgactcttactctgattttcagATTCTTGGAAGTGGCATGTCAAACAGGATGTGGGAGACACTTGCAGAGCATTCCAAGACATGTGTATTGAGTGAAATGCTTTACGTCTACTATCCCGAGG
              ||| ||   ||| | || |       |||      | |  |||| | | |||    ||  ||||     |||||||||||||||||||||||||| | |||||||||   |   |  |||||| | || || || ||  | || | || ||| || ||||| ||| |||| |
-------------gtaagtaatgagtttttttctctctctttctctctctttctttcagc-tcatg-tagttggtctggcg--cagATTCTTGGAAGTGGCATGTCAAATAAGATGTGGGAAGGAACAGTGGAGCATGCTAAAACGTGCGTCCTCAGCGGAAAGCTGTATGTCTATTATGCCGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaagatgttcaaatattattattcatcatgatgactcttactctgattttcagATTCTTGGAAGTGGCATGTCAAACAGGATGTGGGAGACACTTGCAGAGCATTCCAAGACATGTGTATTGAGTGAAATGCTTTACGTCTACTATCCCGAGG
                                    ctcttactct  CT-rich tract
      atgttcaaatattatt  TA-rich tract