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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgttttaccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtagATATCTAGCTCCAGAATATGCTTCAAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGAGTTATGTTATTGGAACTTATAACTGGAAAACGA

Basic information

species Arabidopsis thaliana
transcript AT2G18470.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G06430.1 (Glycine max), 3'ss of exon 5
gtaagcgttttaccgtatgataagattgttcgtgacactcaagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtagATATCTAGCTCCAGAATATGCTTCAAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGAGTTATGTTATTGGAACTTATAACTGGAAAACGA
||||       |||  ||| |   ||  |||  || |||  | | |   ||    |  | |      |   | | ||  ||   ||         || ||||| || |||||||| || ||||| || ||||| || |||||||| ||||||||||| |  || || ||| |||| ||||| |||||||||||||||
gtaatttcggcaccccatggtttaatacttctagaaactataaaga---aagtgataaaaatggggattaatagtttaattttgcatgttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTCATAACTGGAAAACGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtagATATCTAGCTCCAGAATATGCTTCAAGCGGTAAATTAACCGAGAAATCCGATGTTTTCTCTTACGGAGTTATGTTATTGGAACTTATAACTGGAAAACGA
                 gactaat  putative branch site (score: 2)
                    taatcta  TA-rich tract