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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagctattgtttcctttactcatgaacttcagtatacactgacacttaggaagataagaagacataatacatttttcttttgcagGAAATTCATGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATCAAATATTGCATAGGTACACTTGTGTCGATTTCAGCAGTGGGACTCGCCG

Basic information

species Arabidopsis thaliana
transcript AT2G16460.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083355|gb|DR379114.1|DR379114
EST:     TAGCTAATCAGAATACCGAAACAACAAACCTCACAAACAAGCTTGACAGG                         GAAATTCATGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATC
genomic: TAGCTAATCAGAATACCGAAACAACAAACCTCACAAACAAGCTTGACAGGgtatatagct ... tcttttgcagGAAATTCATGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATC
EST: gi|164080872|gb|ES112327.1|ES112327
EST:     AAACCTCACAAACAAGCTTGACAGG                         GAAATTCATGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATC
genomic: AAACCTCACAAACAAGCTTGACAGGgtatatagct ... tcttttgcagGAAATTCATGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatacactgacacttaggaagataagaagacataatacatttttcttttgcagGAAATTCATGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATCAAATATTGCATAGGTACACTTGTGTCGATTTCAGCAGTGGGACTCGCCG
      cactgac  putative branch site (score: 2)
                                     tacatttttctttt  putative PPT
                                 ataatacatttttctt  TA-rich tract