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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatgtgaaattgcttggaataaattctgtgctatctttattaaatctgcttaatccgcagGATACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCAAAGGGGATGGTTACAGTCACTGTGAAC

Basic information

species Arabidopsis thaliana
transcript AT2G14740.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA01G45380.1 (Glycine max), 3'ss of exon 6
----------gtataatgtga--aattgcttgga-ataaattctgtgctat------ctttattaaatctgcttaa-tccgcagGATACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCAAAGGGGATGGTTACAGTCACTGTGAAC
          ||||||    |  |  |  |   | |  |||   | | |||       ||| | | || ||  ||  | | |||||||| || ||||| |||||||| || || |||   ||||||||||| ||||||||||| |||||||| |     |||||| 
gtatttatctgtataaaacaactagctaataaaagagcaatgtggggttatagtttattttctaacatatgtgtatctgctcagGATACATTCCGTGGGAGAGTATGTGAATGCCCTCTGGTTGATGGTGTACAATTCAAAGGAGATGGTTATACAACTTGTGAAG

upper sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EFJ30872 (Selaginella moellendorffii), 3'ss of exon 6
gtataatgtgaaattgcttggaataaattctgtgctatctttattaaatctgcttaa-tccgcagGATACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCAAAGGGGATGGTTACAGTCACTGTGAAC
         | || |  |  || |  |||||    | | |  | | |   |  |    |  |||||||||||| ||||||||||| ||||||||||| |  ||  | || ||||| | ||  || ||||| ||||||||||||||| 
---------gtaagttatcagattttattct----tgtttgcagtcagctttttcgtctttgcagGATACTTTCCGTGGAAGAGTGTGCGAGTGTCCCATTGTGCAGGGCGTGCAGTACAGCGGAGATGGATACAGTCACTGTGAAG

upper sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 6
gtataatgtgaaattgcttggaataaattctgtgctatctttattaaatctgcttaa-tccgcagGATACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCAAAGGGGATGGTTACAGTCACTGTGAAC
         | || |  |  || |  |||||    | | |  | | |   |  |    |  |||||||||||| ||||||||||| ||||||||||| |  ||  | || ||||| | ||  || ||||| ||||||||||||||| 
---------gtaagttatcagattttattct----tgtttgcagtcagctttttcgtctttgcagGATACTTTCCGTGGAAGAGTGTGCGAGTGTCCCATTGTGCAAGGCGTGCAGTACAGCGGAGATGGATACAGTCACTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattgcttggaataaattctgtgctatctttattaaatctgcttaatccgcagGATACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAATTCAAAGGGGATGGTTACAGTCACTGTGAAC
                                          gcttaat  putative branch site (score: 4)
                                       tctgctt  CT-rich tract
                          tatctttattaaatct  TA-rich tract