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gtacttttgatattcctgggaagaatttctattatatctattatctattaatctgattaatttgcagGATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTTGATGGTGTGCGATTCAAAGGAGATGGTTACAGCCACTGTGAGC
species | Arabidopsis thaliana |
transcript | AT2G14720.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAATGGCGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAG GATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTTGATGGTEST: gi|124793716|gb|EH883395.1|EH883395
genomic: ACAATGGCGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAGgtacttttga ... taatttgcagGATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTTGATGGT
EST: ACAATGGCGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAG GATACGTTTCGTGGAAAAGTAEST: gi|125036189|gb|EL108458.1|EL108458
genomic: ACAATGGCGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAGgtacttttga ... taatttgcagGATACGTTTCGTGGAAAAGTA
EST: CTGCTTGCAAG GATACGTTTCGTGG-AAAGTATGCGTGTGTCCTATAGTTGATGGTGTGCGAEST: gi|164226131|gb|ES086131.1|ES086131
genomic: CTGCTTGCAAGgtacttttga ... taatttgcagGATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTTGATGGTGTGCGA
EST: CAATGGTCGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAG GATACGTTTCGTAGGAAAAGTATGCGTGTGTCCTATAGTTGATGG
genomic: CAATGG-CGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAGgtacttttga ... taatttgcagGATACGTTTCGT-GGAAAAGTATGCGTGTGTCCTATAGTTGATGG
ttcctgggaagaatttctattatatctattatctattaatctgattaatttgcagGATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTTGATGGTGTGCGATTCAAAGGAGATGGTTACAGCCACTGTGAGC
aatttctattatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttgatattcctgggaagaatttctattatatctattatctattaatctgattaatttgcagGATACGTTTCGTGGAAAAGTATGCGTGTGTCCTATAGTTGATGGTGTGCGATTCAAAGGAGATGGTTACAGCCACTGTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG