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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaataacgcatacaacaaaatagtgtgtgtgtgttgaggttcttactaatggatttatattatttcgtcctgacattttgcattcatgtgtagCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTGTGGGCATGTTTCGGTCTTTCATGTGGTGTTTACGCACTGATAACTTTCTATCGTGTTAGCAG

Basic information

species Arabidopsis thaliana
transcript AT2G14255.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073398|gb|DR369155.1|DR369155
EST:     CAGCTTAATAGTCATTCTTATGGTCCTCTTCATCACATCCATTGTTTCAG                         CTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTGTGGGCATGTTTCG
genomic: CAGCTTAATAGTCATTCTTATGGTCCTCTTCATCACATCCATTGTTTCAGgtgaataacg ... tcatgtgtagCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTGTGGGCATGTTTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttactaatggatttatattatttcgtcctgacattttgcattcatgtgtagCTTCTAATCTCCCAAAGATAACTGCTATGGTTGGTCTGTGGGCATGTTTCGGTCTTTCATGTGGTGTTTACGCACTGATAACTTTCTATCGTGTTAGCAG
     tactaatggatttata  TA-rich tract