Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattgatctgacattgcaacagaacatagaacttacaatcttccatcttttatcaagtcaccacacaatgaatttttatagGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGA

Basic information

species Arabidopsis thaliana
transcript AT2G02810.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02810.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA01G05170.1 (Glycine max), 3'ss of exon 6
-------gtatatattgatctgacattg---caacagaacatagaacttacaatcttccatctt----ttatcaagtcaccacac-aatgaatttttatagGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGA
        |  |  |   | | |  |||    | |||| | || ||   | | || |  || ||    |||| |  | |    |    |     ||   ||||| || |||||    || ||||| || |||||||| ||||| |||||||| || |||||||| ||||| ||||||||||| | ||| |  |  |  |||
caaatatttgaacttctctttaatgttgacttatcagatctta-aatgcagattcattgatattaattttattattttaaactattggtttgccttaccagGTATCCAAAAACAAGTGCTTGGGATATTATGCTGGGCATGAATTTATGGGGAACCATATACAATATGATTTACATGTTTGGATGGCCCCGTGCCAGTGGA

upper sequence: AT2G02810.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G02330.1 (Glycine max), 3'ss of exon 6
------------gtatatattgatctgacattgcaac--agaacatagaacttacaatcttccatcttttatcaagtcaccacacaatgaatttttatagGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGA
             |   |    |       ||  | |  |||||||   |  || | |  |     |||||| |  |      |   |     ||   ||||| || |||||    || ||||| || |||||||| ||||| |||||||| || ||||| || ||||| ||||||||||| | ||| || |  |  |||
ctgttggactttcttagtggcaaatgactcttttagctaagaacatcttaaataaattgatattaattttattattttgaactatggtttgccttaccagGTATCCAAAAACAAGTGCTTGGGATATTATGCTGGGCATGAATTTATGGGGAACCATATATAATATGATTTACATGTTTGGATGGCCCCATGCCAGTGGA

upper sequence: AT2G02810.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv01s0026g01890.t01 (Vitis vinifera), 3'ss of exon 6
-------gtatatattgatctgacattgcaacagaacataga-acttacaatcttccatcttttatcaagtc-----accacacaatgaatttttat--agGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGA
        |    |||||    |  |   | |   |   ||  |  |      || |||| | || ||  |      | ||||   |   || || |  |||||||| || ||    || ||||| |||||| | |||||||| |||||||| || |||||||||||| | ||||||||||| | |||||| ||||  |||
aatgacttttctcattgaggcaat-tcatatcctcatccagccatctgtgtggttacatcctgtaccagttttcccaatcacatcgtttcttcttgtgcagGTACCCAAAGACAAGTGCATGGGATATAATGTTCGGAATGAATTTATGGGGTACCATATACAACATGGTTTACATGTTTGGATGGCCACATGGGAGCGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079781|gb|DR375538.1|DR375538
EST:     GATTCACAAATGCCACACAAGACTCCATTGCCTCAAG                         GTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGG
genomic: GATTCACAAATGCCACACAAGACTCCATTGCCTCAAGgtatatattg ... atttttatagGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacttacaatcttccatcttttatcaagtcaccacacaatgaatttttatagGTACCCGAAAACCGAAGCGTGGGACATAATGCTGGGAATGAACTTATGGGGCACAATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGA
   aacttac  putative branch site (score: 2)
                                              tttttat  putative PPT
                                      acaatgaatttttata  TA-rich tract