1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttagacagCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGACCAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAG
species | Arabidopsis thaliana |
transcript | AT2G02710.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG AEST: gi|116453954|gb|EG496546.1|EG496546
genomic: CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcc ... ttttagacag-
EST: CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG AEST: gi|125200498|gb|EL215452.1|EL215452
genomic: CATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAGgtacatatcc ... ttttagacag-
EST: CAGTTCGTAATGCTTCAGGCAAG CATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTA
genomic: CAGTTCGTAATGCTTCAGGCAAGgtacatatcc ... ttttagacagCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTA
catgtagaactgaaagtaattagtacagttactgatttctgctttttttagacagCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGACCAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAG
tactgat putative branch site (score: 2)
tttctgcttttttt CT-rich tract
aaagtaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatatcccttcatgactacatacttcctgttaccaaatccttttgtctttcattttttggccttgatacaaaacccgaatatgacatgtagaactgaaagtaattagtacagttactgatttctgctttttttagacagCATATTTTGTGGGTGTTCAAGTAGAAGCAAGTTGTAGAAATACTGAAATTAAAGAGCTGAGACCAGAGACGAGACAACTGAGTGTTGTCGGTGCGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA