Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcaccctgcatgctcctatatctagttagcgtggacccttcttatactttgaattcctctcttttttactgattaagctctcttgcttttttcttacttttttgtgaagGTTGGATATAAAGTTCGATTGGAAGGTGTTAAAGGAAGAGATACCCGCTTACTCTTCTGCACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAA

Basic information

species Arabidopsis thaliana
transcript AT2G01130.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01130.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 9
----------------------------------gtgagtttcaccctgcatgctcctatatctagttagcgt----ggacccttcttatactttgaattcctctcttttttactgattaagctctcttgcttttttcttacttttttgtgaagGTTGGATATAAAGTTCGATTGGAAGGTGTTAAAGGAAGAGATACCCGCTTACTCTTCTGCACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAA
                                   |    | |   |  | | ||  | | | |  ||||  |    | |    ||     || |   || |||||    || ||   |         ||  | | |||  |  |  |   ||||||||||||||||||||| | || ||| | ||||| ||||||||||   | ||||| ||||||||||||||||| || ||| | ||  | |  |||||||
gttagtttatctgccaaagacaactattcttaatatactatcccaacctcttactgttctgttttcttagaatttcagtatttctccctatctgttggttgctctcacactttctctctctctctctctgtctctatctctccctccttgaaagGTTGGATATAAAGTTCGACTTGAGGGTATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctctcttttttactgattaagctctcttgcttttttcttacttttttgtgaagGTTGGATATAAAGTTCGATTGGAAGGTGTTAAAGGAAGAGATACCCGCTTACTCTTCTGCACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAA
                                    ttcttac  putative branch site (score: 2)
                       ctctcttgcttttttc  CT-rich tract
                                ttttttcttacttttt  TA-rich tract