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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcttcttgtttaacttatgataatattcagtttggtgtcttgtagcttcacacagttattaaggtgttctttgctttatcagAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCATGATCACGACCATGATCATCATCATGATCACAACCATGACCACGACCATCATCACCAC

Basic information

species Arabidopsis thaliana
transcript AT1G80480.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125302422|gb|EL316507.1|EL316507
EST:     AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAG                         AATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCA
genomic: AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttct ... gctttatcagAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCA
EST: gi|125048763|gb|EL121032.1|EL121032
EST:     AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAG                         AATCGAAAGCTCTGTGAA
genomic: AATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttct ... gctttatcagAATCGAAAGCTCTGTGAA
EST: gi|124886070|gb|EH964972.1|EH964972
EST:     CTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAG                         AATCGAAAGCTCTGTGAATGAAGATGAT
genomic: CTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGAGgtctgcttct ... gctttatcagAATCGAAAGCTCTGTGAATGAAGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttggtgtcttgtagcttcacacagttattaaggtgttctttgctttatcagAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAGATCACCATGATCACGACCATGATCATCATCATGATCACAACCATGACCACGACCATCATCACCAC
                                       ttctttgctttatc  CT-rich tract
                          agttattaa  TA-rich tract