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gtatattcactcatacccatatacattcaagtgatgctattggtgcatgacaaatgggctgtgttttcgtttgtttgtatgacatgttttaaaatttttattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGTTCGTAGAACTGATGATGAACCTCTGCAGAAGCTCTTTATGTCTGTTAGG
species | Arabidopsis thaliana |
transcript | AT1G79940.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCAAG CAAAGTTATGGAAGEST: gi|116420065|gb|EG462657.1|EG462657
genomic: CAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCAAGgtatattcac ... tattgtccagCAAAGTTATGGAAG
EST: AAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCCAAG CAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGEST: gi|164120830|gb|ES141336.1|ES141336
genomic: AAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGG-CCCCAAGgtatattcac ... tattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAG
EST: ACCCTCTCTGGCCCCAAG CAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGTEST: gi|164163057|gb|ES094769.1|ES094769
genomic: ACCCTCTCTGGCCCCAAGgtatattcac ... tattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGT
EST: CAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCAAG CAAAGTTATGGAAGTTTTCACCAAGGCAGEST: gi|116473043|gb|EG515635.1|EG515635
genomic: CAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCAAGgtatattcac ... tattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAG
EST: CAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCAAG CAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGT
genomic: CAAACACTCTCCGCATATTATTATCTAATGAAACCCTCTCTGGCCCCAAGgtatattcac ... tattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGT
atgggctgtgttttcgtttgtttgtatgacatgttttaaaatttttattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGTTCGTAGAACTGATGATGAACCTCTGCAGAAGCTCTTTATGTCTGTTAGG
tttttatt CT-rich tract
tttgtatgacatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattcactcatacccatatacattcaagtgatgctattggtgcatgacaaatgggctgtgttttcgtttgtttgtatgacatgttttaaaatttttattgtccagCAAAGTTATGGAAGTTTTCACCAAGGCAGCTGAGTACATGGAGATTCCAGTTCGTAGAACTGATGATGAACCTCTGCAGAAGCTCTTTATGTCTGTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC