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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttatgtccccaagaatacctaaaaagattcaatagcctgtgaccttatagaccaaatctattaaaacatatatccagGTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAGTGGCATCCTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G78680.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079132|gb|DR374889.1|DR374889
EST:     TGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAG                         GTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAG
genomic: TGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAGgtatttttat ... atatatccagGTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAG
EST: gi|86079085|gb|DR374842.1|DR374842
EST:     TGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAG                         GTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAG
genomic: TGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAGgtatttttat ... atatatccagGTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagattcaatagcctgtgaccttatagaccaaatctattaaaacatatatccagGTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAGTGGCATCCTGAG
                               aaatctattaaaacat  TA-rich tract