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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgttctcctcatcttcttcttcttcttcttcttctttttttctgtcacatctggcttcttacagaatatacctcatgtgcacttatcttctaaggatatgtattatataagatagtaacattctttcatggtcatgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATCTGATATCACATATCTGCTTTTGTCCAAGTTCGGTATACTCCTTAACCCG

Basic information

species Arabidopsis thaliana
transcript AT1G77440.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076869|gb|DR372626.1|DR372626
EST:     TCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGT                         AACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
genomic: TCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTgtaagttttg ... tgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
EST: gi|124810598|gb|EH895470.1|EH895470
EST:     GGACATGTCTACGTTGT                         AACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
genomic: GGACATGTCTACGTTGTgtaagttttg ... tgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
EST: gi|152033965|gb|BP821505.2|BP821505
EST:     TTGACCGCCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGT                         AACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
genomic: TTGACCG-CGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTgtaagttttg ... tgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
EST: gi|116388094|gb|EG430686.1|EG430686
EST:     TCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGT                         AACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTG
genomic: TCAGTTGACCGCGATTGTCTTAGTGGGTGGGGAGGACATGTCTACGTTGTgtaagttttg ... tgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTG
EST: gi|164014347|gb|ES141865.1|ES141865
EST:     CATGTCTACGTTGT                         AACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC
genomic: CATGTCTACGTTGTgtaagttttg ... tgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaggatatgtattatataagatagtaacattctttcatggtcatgttgtccagAACACCAAAGGAGGTGAAGGAGAGAATCCTGAAGGGAAGGATGGATTGATCTGATATCACATATCTGCTTTTGTCCAAGTTCGGTATACTCCTTAACCCG
                       tagtaac  putative branch site (score: 1)
      atatgtattatataag  TA-rich tract