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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccatcaatcacaccctttttttgtttctgccttaccaaagtttatttgatctagtatttcttgattttggtagGTTTGCAGCAGCATTAAACGATCTGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGA

Basic information

species Arabidopsis thaliana
transcript AT1G77260.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77260.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA13G09520.1 (Glycine max), 3'ss of exon 6
---------------------------------------------gtaaccatcaatcacacccttttttt---gtttctgccttaccaaagt-ttatttg---atctagtatttc-ttgattttggtagGTTTGCAGCAGCATTAAACGATCTGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGA
                                               |    ||  | |     ||| | |    |   || || |      | ||||  |    | || ||| || |||||    | ||  |||| || ||  |  | |||||   | |||||||||||||||||||  ||||||| || || ||||| || |||||||| ||||| |||||||| || 
gtatgagagtattacatttcttgctttctttttctgttatatattacatttgtcggttattaggtttctgtagaatgattgtctaatgttgttgttatccgtgtgtgtattatgtcgttgataactgcagAGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGATTTAATACCTTGCCTGTTATATATGACCGCGGG

upper sequence: AT1G77260.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA14G24900.1 (Glycine max), 3'ss of exon 6
---------------------------------------------gtaaccatcaatcac-accctttttttgtt-tctg-ccttaccaaagtttatttgatcta----gta--tttcttgattttggtagGTTTGCAGCAGCATTAAACGATCTGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGA
                                               |    |   | |  |  ||| | | ||| |||| |||| |     | | | ||   ||    |||  |||| | ||    | ||  |||| || ||  |  | |||||   | | |||||||||||||||||  ||||||| || || || || || |||||||| ||||| ||||||||||| 
gtatgggagtattacatttcttgttttctttctctgttttatattacatttgttggttattaggcttctgtagttgtctggccttgctgctatctgtgtgtattatgatgtaactttcattataactgcagAGTTGCTGCTGCGCTGCATGATCTCCAGATCGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGGTTTAATACCTTGCCTGTTATATATGACCGTGGG

upper sequence: AT1G77260.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------------------------gtaaccatcaatcacaccctttttttgtttctgccttaccaaagtttatttgatctagtatttcttgattttgg-tagGTTTGCAGCAGCATTAAACGATCTGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGA
                                                                                    ||  | | ||| | | |      |  ||| |          |  || | |||  | |  |||   |||| ||| |||||||||||||||| |||  ||| |     |||| || |||||||||||  ||||||| ||||| |||||||||||| |||| || || ||||| ||||||
gtattttcttttcattcctcttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagttt---gattatggatagGTTTGCAGCAGCACTAATTGATTTCCAAGTTGATTGCTGGGTTATGAATGTTGTTCCAGTTAGTGGATTCAACACCCTGCCTGTAATCTATGATCGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttctgccttaccaaagtttatttgatctagtatttcttgattttggtagGTTTGCAGCAGCATTAAACGATCTGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGA
                  aaagtttatttgat  TA-rich tract