Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttacccttttatgcatatccatccacatttcctcaagttatcctaaagattatctttaatcgtattaactattgtcgatgtgttgttgttatagGTCATTGGTAACAAGTACCAAAACAAACTACTTGAGATCATTGATGCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G75370.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164219532|gb|ES151446.1|ES151446
EST:     GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACNGTCACGAAGATTCAT                         GTCATTGGTAACAAGTACCAAAACAAACT
genomic: GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCATgtaaatttac ... gttgttatagGTCATTGGTAACAAGTACCAAAACAAACT
EST: gi|164213814|gb|ES170286.1|ES170286
EST:     GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCAT                         GTCATTGGTAACAAGTACCAAAACAAACTAC
genomic: GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCATgtaaatttac ... gttgttatagGTCATTGGTAACAAGTACCAAAACAAACTAC
EST: gi|164172983|gb|ES145410.1|ES145410
EST:     GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACNGTCACGAAGATTCAT                         GTCATTGGTAACAAGTACCAAAACAA-CTAC
genomic: GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCATgtaaatttac ... gttgttatagGTCATTGGTAACAAGTACCAAAACAAACTAC
EST: gi|124741856|gb|EH833018.1|EH833018
EST:     GTTTCTTGATCCAAAAACAGTCACGAAGATTCAT                         GTCATTGGTAACAAGTACCAAAACAAACTACTTGAGATCATTGATGCAAG
genomic: GTTTCTTGATCCAAAAACAGTCACGAAGATTCATgtaaatttac ... gttgttatagGTCATTGGTAACAAGTACCAAAACAAACTACTTGAGATCATTGATGCAAG
EST: gi|163980045|gb|ES142712.1|ES142712
EST:     GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCAT                         GTCATTGGTAACAAGTACCAAAAACAAACTAC
genomic: GGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCATgtaaatttac ... gttgttatagGTCATTGGTAACAAGTACCAAAA-CAAACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctaaagattatctttaatcgtattaactattgtcgatgtgttgttgttatagGTCATTGGTAACAAGTACCAAAACAAACTACTTGAGATCATTGATGCAAG
                       tattaac  putative branch site (score: 1)
     aaagattatctttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatttacccttttatgcatatccatccacatttcctcaagttatcctaaagattatctttaatcgtattaactattgtcgatgtgttgttgttatagGTCATTGGTAACAAGTACCAAAACAAACTACTTGAGATCATTGATGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA