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gttagacatgtgtagtgactaattcctgttttgacttttgtgtactgactcgtaatgctaaacaagaaatgttgtgtaacttcttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGG
species | Arabidopsis thaliana |
transcript | AT1G75220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATGAGAGGAGGATTGGGTTCGGTTAACCAG CTTTCTGTGACAATTGGAATAATGTTGGCGTATTTAEST: gi|86059936|gb|DR355693.1|DR355693
genomic: TATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTA
EST: CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAG CTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTTEST: gi|125179520|gb|EL197214.1|EL197214
genomic: CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTT
EST: TGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGGTTCGGTTAACCAG CTTTCTGTGAACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCEST: gi|125217875|gb|EL231958.1|EL231958
genomic: TGAGATAGCTCCACAAAATATGAGAGGAGGATTGGG-TTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGA-CAATTGGAATAATGTTGGCGTATTTACTTGGCCTC
EST: CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAG CTTTCTGTGACAATTGGA
genomic: CTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGTTCGGTTAACCAGgttagacatg ... cttgctgtagCTTTCTGTGACAATTGGA
ttgtgtactgactcgtaatgctaaacaagaaatgttgtgtaacttcttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGG
cttcttgct CT-rich tract
taaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagacatgtgtagtgactaattcctgttttgacttttgtgtactgactcgtaatgctaaacaagaaatgttgtgtaacttcttgctgtagCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA