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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttaactaatatccaacttatgcttaatactatactctatataccacatatctgaacccttgagtttgatttatttccattgcagCTTCTCCGTATCGAAGAGGAACTCGGCAATGTGCGCTACGCCGGTGAAGCTTTCCGATCACCATGAGAAATTCGAGAAAGGCACTCATTGGCGGCTTTTG

Basic information

species Arabidopsis thaliana
transcript AT1G74030.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74030.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA06G23080.1 (Glycine max), 3'ss of exon 6
-------------gtagttaactaatatccaacttat-gcttaatactatactctatataccacatatctgaacccttgagtttgatttatttccattgcagCTTCTCCGTATCGAAGAGGAACTCGGCAATGTGCGCTACGCCGGTGAAGCTTTCCGATCACCATGAGAAATTCGAGAAAGGCACTCATTGGCGGCTTTTG
              |  ||   ||  || |||    | || | ||| |  | |  || ||  ||| ||       |   | ||| ||| | || | || |||||||| || || ||||||||||| || | |||||  || ||||||||||||||| ||||||| |        |   |  |    | |    |   || ||
agtaatttttagaatgcttctttagcattcaatcgctagcatgataatggagtg-atctaatacacattctccatcgcaaattt-attcaatttcttttcagCTTCTTCGGATTGAAGAGGAACTTGGAAGTGTGCAATATGCCGGTGAAGCTTTCAGATCACCTTAGAGTGAACACAAGTGATCTTAAAAATCTTATTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124869576|gb|EH954013.1|EH954013
EST:     CTCCATGCCGAAGTGAACGATTGTCTAAAATACTAACCAG                         CTTCTCCGTATCGAAGAGGAACTCGGCAATGTGCGCTACGCCGGTGAAGC
genomic: CTCCATGCCGAAGTGAACGATTGTC-AAAATAC-AACCAGgtagttaact ... tccattgcagCTTCTCCGTATCGAAGAGGAACTCGGCAATGTGCGCTACGCCGGTGAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatactctatataccacatatctgaacccttgagtttgatttatttccattgcagCTTCTCCGTATCGAAGAGGAACTCGGCAATGTGCGCTACGCCGGTGAAGCTTTCCGATCACCATGAGAAATTCGAGAAAGGCACTCATTGGCGGCTTTTG
                                 gtttgat  putative branch site (score: 5)
                                       tttatttcc  CT-rich tract
                                agtttgatttattt  TA-rich tract