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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttatcatacacttcatctttttctgtgacatcaaaatttcattccaggtcttcttaacttcgaatttatttgtgctatttccgtgaagccagtaaacttacgttcaattgattttgtttacaagATGGGTATTATGTGGGAAGAATTAGCTCCAAGATTCAAGGATCTTCTTGAGCAAGGGAAGTCAGGTGTTGTGGCTTCTCTGATAGCAGTTAGCCAAAGGC

Basic information

species Arabidopsis thaliana
transcript AT1G72320.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125150666|gb|EL183193.1|EL183193
EST:     AAGCATTAATCTCCCATGCAAGAGACCAAGAGCAG                         ATGGGTATTATGTGGGAAGAATTAGCTCC
genomic: AAGCATTAATCTCCCATGCAAGAGACCAAGAGCAGgtatctttat ... tgtttacaagATGGGTATTATGTGGGAAGAATTAGCTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgctatttccgtgaagccagtaaacttacgttcaattgattttgtttacaagATGGGTATTATGTGGGAAGAATTAGCTCCAAGATTCAAGGATCTTCTTGAGCAAGGGAAGTCAGGTGTTGTGGCTTCTCTGATAGCAGTTAGCCAAAGGC
                                          ttttgttt  CT-rich tract
                                    aattgattttgttta  TA-rich tract