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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaacttcttagtctattagtctttaggactgacatgtgtctctgaataatcaatctattagtctttaggactgacttcttacaatgttttattcagGCAACAGCATACTTGGAGCAGGCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAATCCTTGATCAAACAGTTGTTGTATAGTCCGAAAC

Basic information

species Arabidopsis thaliana
transcript AT1G72280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72280.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv19s0027g00090.t01 (Vitis vinifera), 3'ss of exon 6
gtgagcaacttcttagtctattagtctttaggactgacat-gtgtctc---tgaataatcaatctattagt-ctttaggactgacttcttacaatgttttattcagGCAACAGCATACTTGGAGCAGGCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAATCCTTGATCAAACAGTTGTTGTATAGTCCGAAAC
|| || |  | |    | |  | || || ||  || | ||  | |||    | |||||  ||| | ||| | || | ||  |     |||| ||| | |  | |||||| |||| || ||||||||||| |||||  ||||||| |||||||| || || || ||||||||||||||||| |  ||| |  | |  | ||| ||||
gttagtatttaccgtttgtccttgttttgagaccttaaatcatatcttatatcaataaataatttcttaatgctcttggtttttacccttaaaat-tgtgttgcagGCATCAGCTTATTTGGAGCAGGCTGAGTACAACACAGGTAACCATGCAGAGGACCTAAAAACACAATCCTTGATGAGGCAGCTCCTTTGCAATCCCAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaataatcaatctattagtctttaggactgacttcttacaatgttttattcagGCAACAGCATACTTGGAGCAGGCAGAGTATGACACAGGAAACCATGCTGAAGATCTGAAAACACAATCCTTGATCAAACAGTTGTTGTATAGTCCGAAAC
                                  ttcttac  putative branch site (score: 2)
                                             ttttattc  putative PPT
                                     ttacaatgttttatt  TA-rich tract