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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattaattaagtgattttcaggataatcgattggaagactttgacgtgggtaattagatgtctatctttgttacttaaagaattgcattttgtattgttttcacttgcagGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G71900.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71900.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G104147_T02 (Zea mays), 3'ss of exon 6
gtaactattaattaagtgattttcaggataatcgattggaagactttgacgtgggtaattagatgtctatctttgttacttaaagaattgcattttgtattgttttcacttgcagGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAG
     |   ||||       | ||| | | |||  ||  || ||||| |  |   |  |||    |   |  |||  |  |||     ||  ||||       ||| | |||||||| || |||||||| ||||||||  |||| || || ||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| |||
-----ttgcaattcttactgtatcaagctgatc--ttctaatactttaaaata--tggttaagaat---tacttgcaagctaagttgatgagtttt---cctctttaaattgcagGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125209256|gb|EL224210.1|EL224210
EST:     CGTACTTACTTGTGTGGTAACCCAACTGAACTACTTAAACAAG                         GCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATAC
genomic: CGTACTTACTTGTGTGGTAACCCAACTGAACTACTTAAACAAGgtaactatta ... tcacttgcagGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgtctatctttgttacttaaagaattgcattttgtattgttttcacttgcagGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAG
                                          ttttcactt  CT-rich tract
                               attttgtattgtttt  TA-rich tract