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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcattccctttgtttgatgttttgacttcacgtcataaattgtttatcatcttctcaacagTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTAC

Basic information

species Arabidopsis thaliana
transcript AT1G67850.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 6
------gttggttcattcc---ctttgtttg-atgt-tttgacttcacgtcata-aattgtttatcatcttctcaacagTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTAC
       |  |||||||||   || |||||| || |  |||  |    ||| |  || ||   ||   |||   ||||||||||||  |||||||||||| | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |
gtcttaatcagttcattcctctctctgtttgcatatgcttgtttatgtgtcttttaactgagaatttgcttt--aacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 6
------gttggttcattcc---ctttgtttg-atgttttgacttcacgtcataaattgtttatcatcttctc-aacagTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTAC
       |  |||||||||   || |||||| || |  |   || | ||      |   | |  || | ||  ||||||||||||  |||||||||||  | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |
gtcttaatcagttcattcctctctctgtttgcatatgcttgttt-atgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttgtttgatgttttgacttcacgtcataaattgtttatcatcttctcaacagTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTAC
             ttttgac  putative branch site (score: 3)
                                    tttatcatcttctc  putative PPT
                            ataaattgtttatcat  TA-rich tract