1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctcggcagatcgtagtatagcagtttcttagctttgttcttatcatatgttcatgacaacaaaagcatatagctgaaaaaactgagttgtttgactcagGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCATTAACCGTTAAAGTGAGAGGCGCAATCCCGGCCCTTCCAACCAAAGAAG
species | Arabidopsis thaliana |
transcript | AT1G66430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCAATGATCTCTCCTTGCTTCAG GACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCAEST: gi|124982191|gb|EL055015.1|EL055015
genomic: GCCAATGATCTCTCCTTGCTTCAGgtaacctttc ... tttgactcagGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCA
EST: CGCAACTAGCCAATGATCTCTCCTTGCTTCAG GACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGG-CAEST: gi|124713379|gb|EH804781.1|EH804781
genomic: CGCAACTAGCCAATGATCTCTCCTTGCTTCAGgtaacctttc ... tttgactcagGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCA
EST: TCGCAACTAGCCAATGATCTCTCCTTGCTTCAG GACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCA
genomic: TCGCAACTAGCCAATGATCTCTCCTTGCTTCAGgtaacctttc ... tttgactcagGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCA
atatgttcatgacaacaaaagcatatagctgaaaaaactgagttgtttgactcagGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCATTAACCGTTAAAGTGAGAGGCGCAATCCCGGCCCTTCCAACCAAAGAAG
gtttgac putative branch site (score: 4)
tgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcggcagatcgtagtatagcagtttcttagctttgttcttatcatatgttcatgacaacaaaagcatatagctgaaaaaactgagttgtttgactcagGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAATGCATGCGGGGCATTAACCGTTAAAGTGAGAGGCGCAATCCCGGCCCTTCCAACCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -atgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaac