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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatgttctctgcattctctgttttgtttttgtcctgtttgaatttttcctttacgcagaaacaactgatctgaataaactatgctaagcctagttagaaactttcctaagtctaatacaaattcataaacaaaatgcagATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G63700.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63700.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtatatgttctctgcattctctgttttgtttttgtcctgtttgaatttt-tcctttacgcagaaacaactgatctgaataaactatgctaagcctagttagaaactttcctaagtctaatacaaattcataaacaaaat-gcagATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAG
                                               ||| |  |   | ||   |    || | |    |||   | ||  ||| | |   ||   |  |   |     | |      | |  ||| |   | |||||||||||  |||||| |||| ||||| || ||||||||||| || |||||||||||||||
----------------------------------------------aaatgtgattgataacctggtttgaattaaatctaatt--ccattgtaaacatcaataatgagctgtgtgttcttgactagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcctagttagaaactttcctaagtctaatacaaattcataaacaaaatgcagATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAG
                         gtctaat  putative branch site (score: 3)
                            taatacaaattcataa  TA-rich tract