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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttctttctgcaatcagatattgttggtttcattgttaaaagttttccctactctatcattctagcttgcataagataatactctgatgtttggactctttatttgtagGATCCAACATGCATCATATGCCAGCAGTTTCTTCATCTTTCTGCTATCGTCTGCAATTGCAGGCCATCTGTTTTTGCATGCTTAGAG

Basic information

species Arabidopsis thaliana
transcript AT1G63490.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63490.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv02s0025g03560.t01 (Vitis vinifera), 3'ss of exon 6
gtttttctttctgcaatcagatattgttggtttcattgttaaaagttttccctactctatcattctagcttgcataagataatactctg-atgtttggactctttatttgtagGATCCAACATGCATCATATGCCAGCAGTTTCTTCATCTTTCTGCTATCGTCTGCAATTGCAGGCCATCTGTTTTTGCATGCTTAGAG
    |   |  ||     ||   |||||| ||    | ||       |  || |||  || ||  ||   ||   |   |  |  |    || ||  ||    || |||  |||||||||||||||| |||||||||||||  ||   |||||||||| | || |||   || |||||||||| ||||| |||  | |||
---gtatgtgatgtgtgtaggc-ttgttgattctgattttttggccatatccaacta-atgatgttaaggtgataatagtggtgatgcatatcttatgatggcttgttt--agGATCCAACATGCATTATATGCCAGCAGTACCTGTTTCTTTCTGCTGTTGTTTGCTGCTGTAGGCCATCTGCTTTTGTATGTCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcattctagcttgcataagataatactctgatgtttggactctttatttgtagGATCCAACATGCATCATATGCCAGCAGTTTCTTCATCTTTCTGCTATCGTCTGCAATTGCAGGCCATCTGTTTTTGCATGCTTAGAG
                           ctctgat  putative branch site (score: 4)
                                         ctctttattt  putative PPT
                ataagataata  TA-rich tract