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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgccttatgaagcttttgagcaatttcgtgcacttatatccaaagtttgtatacataagcttcattgaaagagtataacctttagtaaattattacaagtaacacaatcataagacgagtgcttgccacagtgcatatcaaaagatcaatctttgtttattaacgaaatgtcctttcatttcgtgcagGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGATGGGGATGGTCGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G62640.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125097014|gb|EL153614.1|EL153614
EST:     GTGCTGTGGTTGTTCAG                         GCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGAT
genomic: GTGCTGTGGTTGTTCAGgtactgtgcc ... tttcgtgcagGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGAT
EST: gi|116483552|gb|EG526144.1|EG526144
EST:     GAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTTGTTCAG                         GCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGAT
genomic: GAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTTGTTCAGgtactgtgcc ... tttcgtgcagGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatcaaaagatcaatctttgtttattaacgaaatgtcctttcatttcgtgcagGCTTGTGATATTGAAGATGATGGTTTGTTCAGTTTTGATGTGCACAGCGATGGGGATGGTCGAAG
                        tattaac  putative branch site (score: 1)
                                   tgtcctttcatttc  putative PPT
              aatctttgtttattaa  TA-rich tract