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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttcttaagtctatttcaaatgttgcttgttcttctgtaagagaccttaaatgcatattaacaggcttaagagtttggttttattttgttcagGAGTGACGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGACCACTCTACCGTGCCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G61250.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125243256|gb|EL257341.1|EL257341
EST:     TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAG                         GAGTGACGATATGG
genomic: TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttct ... ttttgttcagGAGTGACGATATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagagaccttaaatgcatattaacaggcttaagagtttggttttattttgttcagGAGTGACGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTATGGTATCGACCACTCTACCGTGCCTTCAG
                 tattaac  putative branch site (score: 1)
 ttttatttt  putative PPT
 ttaaatgcatattaa  TA-rich tract