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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatataggcactttcgttatacagacccttcattatacttctaaacaactggggttactacatttggatagaaacattggaactaaattttgtgtatactataaccaaaaaaaaaaacatcactccttatttatagGTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACCCAAAGTCCCTTGCAGCAGTTCAGGCGCTTCTTTCAAATCAAGGACCTCC

Basic information

species Arabidopsis thaliana
transcript AT1G59610.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063710|gb|DR359467.1|DR359467
EST:     AATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAGA                         GTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACC
genomic: AATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAGAgtgagtatat ... ttatttatagGTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACC
EST: gi|124826572|gb|EH911438.1|EH911438
EST:     CCCTGAAGATCGCAAAGGAGTATGATCCAGAGA                         GTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACC
genomic: CCCTGAAGATCGCAAAGGAGTATGATCCAGAGAgtgagtatat ... ttatttatagGTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaattttgtgtatactataaccaaaaaaaaaaacatcactccttatttatagGTACTAGGACAGTAGGAATTATCAGCAAAATTGATCAGGCAGCAGAGAACCCAAAGTCCCTTGCAGCAGTTCAGGCGCTTCTTTCAAATCAAGGACCTCC
                                         ctccttattt  CT-rich tract
             tatactataaccaaaa  TA-rich tract