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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctctaataacaagttttgtttaccgttatctcatctcgtataatctttgtttagtttggtagaagttcttcataaggattgtaataacagaaaatatgaaaactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTGAAGACATACTGGGAATTCTCGTCATTCCACAACCCAACTGCTGGTGCTG

Basic information

species Arabidopsis thaliana
transcript AT1G56450.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164102621|gb|ES128260.1|ES128260
EST:     TTTACCGTGACAGATCTGCTATTAACAAGCTTCAG                         ATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTG
genomic: TTTACCGTGACAGATCTGCTATTAACAAGCTTCAGgtttgtctct ... aactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTG
EST: gi|164022405|gb|ES116800.1|ES116800
EST:     GTATGCGTGTGCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAG                         ATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTC
genomic: GTATGCGTGTGCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGgtttgtctct ... aactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTC
EST: gi|116438502|gb|EG481094.1|EG481094
EST:     GTATGCGTGTGCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAG                         ATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTG
genomic: GTATGCGTGTGCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGgtttgtctct ... aactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTG
EST: gi|116438503|gb|EG481095.1|EG481095
EST:     GTATGCGTGTGCTTCTTTACCGTGACAGATTTGCTATTACCAAGCTTCAG                         ATAGGGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTG
genomic: GTATGCGTGTGCTTCTTTACCGTGACAGATCTGCTATTAACAAGCTTCAGgtttgtctct ... aactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTG
EST: gi|125236335|gb|EL250420.1|EL250420
EST:     ACAGATCTGCTATTAACAAGCTTCAG                         ATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCA
genomic: ACAGATCTGCTATTAACAAGCTTCAGgtttgtctct ... aactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtagaagttcttcataaggattgtaataacagaaaatatgaaaactgtgcagATAGCGAAGATCACGGAAGAGGGCGTGACGGTCTCACAGCCATACTCATTGAAGACATACTGGGAATTCTCGTCATTCCACAACCCAACTGCTGGTGCTG
                          taataac  putative branch site (score: 1)
                          taataacagaaaatat  TA-rich tract