1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatttaggaatccgtatttatattcacctgaaatagagtttgagattctgatagttatggatgtaacagtagtatttattgtaagatttttgtttccctgagataatatctgataagtagtaagtctaagtatatcaatttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGEST: gi|116465699|gb|EG508291.1|EG508291
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGEST: gi|116465718|gb|EG508310.1|EG508310
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGEST: gi|116465735|gb|EG508327.1|EG508327
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGEST: gi|125241870|gb|EL255955.1|EL255955
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGEST: gi|116482410|gb|EG525002.1|EG525002
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAG
EST: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGEST: gi|125301959|gb|EL316044.1|EL316044
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: AGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGEST: gi|125070099|gb|EL135638.1|EL135638
genomic: AGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: AAGGCTCCAATGATCGACAACCCTG AATTCAAGGATGACCCAGAACTCTATGTCTTCCC-AAATTGAAGTATGTTG
genomic: AAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
ttccctgagataatatctgataagtagtaagtctaagtatatcaatttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG
atttgac putative branch site (score: 4)
taagtatatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaggaatccgtatttatattcacctgaaatagagtttgagattctgatagttatggatgtaacagtagtatttattgtaagatttttgtttccctgagataatatctgataagtagtaagtctaagtatatcaatttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG