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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactacatcgttaatagtgtggttcatcttttaatttttggtttttcttccaaacttgtaagcttagcatgtgtattgaataattattctagATAATGGCAGAAGGTCGTCTGTCTGAGCTTCAAGCTTCACAAGAGTATAATCTTTCCTTGTCAAGACAATGTCAAGATATTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G55250.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164044585|gb|ES145616.1|ES145616
EST:     ATGAGATAAAG                         ATAATGGCAGAAGGTCGTCTGTCTGAGCTTCAAGCTTCACAAGAGTATAAT
genomic: ATGAGATAAAGgtaactacat ... attattctagATAATGGCAGAAGGTCGTCTGTCTGAGCTTCAAGCTTCACAAGAGTATAAT
EST: gi|164018574|gb|ES058047.1|ES058047
EST:     GATGAGATAAAG                         ATAATGGCAGAAGGTCGTCTGTCTGAGCTTCAAGCTTCACAAGAGTATAA
genomic: GATGAGATAAAGgtaactacat ... attattctagATAATGGCAGAAGGTCGTCTGTCTGAGCTTCAAGCTTCACAAGAGTATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttttcttccaaacttgtaagcttagcatgtgtattgaataattattctagATAATGGCAGAAGGTCGTCTGTCTGAGCTTCAAGCTTCACAAGAGTATAATCTTTCCTTGTCAAGACAATGTCAAGATATTGAG
                                              ttattct  CT-rich tract
 tattgaataattattc  TA-rich tract