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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagagtaagagacatctctctaacgtttctcacagtggtttagttgtcaacaaaaacttatcaggcttctttggtcttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATTGTTGATGTCATTTCCGAAAGCCAAAAGTATAACAA

Basic information

species Arabidopsis thaliana
transcript AT1G55150.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G01260.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------------------------------gtaagagagtaagagacatctctctaacgtttctcacagtggtttagttgtcaacaaaaacttatcaggcttctttggtcttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATTGTTGATGTCATTTCCGAAAGCCAAAAGTATAACAA
                                                                                                       |||   ||| ||    | | | ||   ||       |||      || |  |   || |  | ||   |||| |  || |  | |||||| || ||||| ||||||||||| |||||||||| |||||| || |||  ||||||  |  |||| ||||  || || ||| | ||
gtaagatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagc--aacaa-tttctgtaatcattgt-gcagGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125061958|gb|EL130487.1|EL130487
EST:     CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAA                         GTGATAATAGGATCTTCTGATTTGAAAGCTAAACCGTGCAATTCGTCAAAT
genomic: CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagt ... ttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAA-CCGTGCAATTCGTCAAAT
EST: gi|116454669|gb|EG497261.1|EG497261
EST:     CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAA                         GTGATATTAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATT
genomic: CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagt ... ttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtggtttagttgtcaacaaaaacttatcaggcttctttggtcttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATTGTTGATGTCATTTCCGAAAGCCAAAAGTATAACAA
                    aaaaacttat  TA-rich tract