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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaatttactctggagaactctttatttatgcgctgtaaacatattatgaagtatgaaatatgcagGAGAGTGTTATCAAATGGGCTTCGCGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCC

Basic information

species Arabidopsis thaliana
transcript AT1G55130.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55130.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G20640.1 (Glycine max), 3'ss of exon 6
------gtaactaa----tttact-ctggagaactctttatttatgcgctgtaaacatattatg--aagtatg-----aaatatgcagGAGAGTGTTATCAAATGGGCTTCGCGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCC
       | | |||    ||  || |     |||| |    | ||  | | | |  |  |||||  |||| ||     |  | | ||||| |||| |||||||||||| || || |||||||||||  |  | ||||| |||||||| ||||||||||| || ||||| ||||| || |||||||| |
gtattgctgattaaaatcttggctaccaataaactttcacctcatttgttatga-tacgttatggcaagtttgttggtactttttcagGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTCTGATGATTGTTC

upper sequence: AT1G55130.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G01240.1 (Glycine max), 3'ss of exon 6
------gtaactaa----tttact-ctggagaactctttatttatgcgctgta-aacatattatg---aagtatg-----aaatatgcagGAGAGTGTTATCAAATGGGCTTCGCGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCC
       | | |||    ||  || ||    || | |    | || |  | ||  | |  ||| |   |||| ||     |  | | ||||| |||| |||||||||||| || || |||||||||||  |  | ||||| |||||||| ||||||||||| || ||||| |||||  | |||||||| |
gtattgctgattaaaatcttggctactcataaattttcacctcattcattatatgatacgttaagccaaagtttgttggtattttttcagGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTTTGATGATTGTTC

upper sequence: AT1G55130.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv09s0002g02140.t01 (Vitis vinifera), 3'ss of exon 6
gtaactaattt-----actctgga--gaactctttatttatgcg---ctgtaaacatattatgaagtatgaaatatgcagGAGAGTGTTATCAAATGGGCTTCGCGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCC
|||| |  |||     |  || |   |   |||    | || ||    | |  || | || |    | |   || | ||||| |||   |||||||||||||| || ||||| |||||| | ||||||||||||||||| ||||||||||| || ||||||||||| || ||||||||||
gtaattctttttcgaaatccttgcttgtcttctcccatgatacggttttttttacttgtttttgcct-tattattttcagGAAAGTAACATCAAATGGGCTTCACGGTGGGATACATACCTCCTTATGAACGATGATCAGATCCACTGGTTCTCCATCATAAACTCTCTGATGATTGTCC

upper sequence: AT1G55130.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EDP05803 (Chlamydomonas reinhardtii), 3'ss of exon 5
------------------------------gtaactaatttactctggagaactc--tttatttatgcgctgtaaacatattatgaagtatgaaatatgcagGAGAGTGTTATCAAATGGGCTTCGCGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCC
                              | |     | |   |  |||  ||        |  || |||||   | |  | ||  |   |  |  ||||||  || |  |||   ||||| |||||||||||||| ||| |||| ||||  || || || || |||||||| || ||||| |||||| | ||||||||||
gcggtgaccggaaacccatgctgggtctgagcactgggtctgagcgcgaggccttgaccgcatcctgggctgtc--cttgctttgctggtggcgacgtgcagGCTAGCGAGATCCGCTGGGCCTCGCGCTGGGACACCTACCTGCTGATGATGGACGACCAGATTCACTGGTTCTCCATCATTAACTCGGTGATGATTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagaactctttatttatgcgctgtaaacatattatgaagtatgaaatatgcagGAGAGTGTTATCAAATGGGCTTCGCGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCC
                              atattatgaagtatga  TA-rich tract