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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctgatttccacccctacgctctatattttctttgatattcagttgatcaaatgatgggtcatctttttgattccagGTTATCACTTACCCTGGGCAGCAAGAGAAATGCTTTGTGTGTGGACAAACTGGCCACTTTGCTTCAGATTGCCCTGGAAAATCAGGTAGCAATAATGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G54490.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116412168|gb|EG454760.1|EG454760
EST:     TAATGCTCTCCTTAGCTACACATGAAGTTCACTTTTCCATCTTAAGAGAG                         GTTATCACTTACCCTGGGCAGCAAGAGAAATGCTTTGTGTGTGGAC
genomic: TAATGCTCTCCTTAGCTACACATGAAGTTCACTTTTCCATCTTAAGAGAGgtagctgatt ... ttgattccagGTTATCACTTACCCTGGGCAGCAAGAGAAATGCTTTGTGTGTGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattttctttgatattcagttgatcaaatgatgggtcatctttttgattccagGTTATCACTTACCCTGGGCAGCAAGAGAAATGCTTTGTGTGTGGACAAACTGGCCACTTTGCTTCAGATTGCCCTGGAAAATCAGGTAGCAATAATGCAG
                                           ttttgat  putative branch site (score: 4)
                                     tcatcttttt  CT-rich tract
         tttgatatt  TA-rich tract