Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtcttttgcgagtttatcatcagtgtccataattcatcataagatttggaaacttcaagctcgtggctcattcataccaactttggtcttgatgcagGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGCACATGCAGCAG

Basic information

species Arabidopsis thaliana
transcript AT1G51710.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124859389|gb|EH943826.1|EH943826
EST:     GTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTTCACAGTTCTGGATG                         GTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTG
genomic: GTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTTCACAGTTCTGGATGgttagtcttt ... cttgatgcagGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttggaaacttcaagctcgtggctcattcataccaactttggtcttgatgcagGTATTACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGCACATGCAGCAG
                                            tcttgat  putative branch site (score: 4)
                           attcata  TA-rich tract