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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagaggtagcatcagtttcatgttgatatctgttaacatatcatgaaatttcattcggcttctctttttgttttcttgattacagGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G34470.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34470.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: PP1S49_181V6.2 (Physcomitrella patens), 3'ss of exon 6
----------------------------------------------gtatagaggta--gcatcagtttcatgttgatatctgttaac---atatcatgaaatttcattcggcttctctttttgttttcttgattacagGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAG
                                               ||     |||  |  | | |||  | | |   ||| ||  |   || |  ||||   |  || |         || ||  ||     | ||||| || ||||| || ||||||||  | ||||| |||||||| || || ||||||||||||||||||||||| || ||||  |||||||| |||
gtaataagcctagcgtgaataaccagcttgaagatgtcactcgaatttaagccagtaaggtgtgaatttggtat-gccctctttttgcttgatgttttgaagcgtagttggatcatgaagttggtactcacctgtgcagGCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083704|gb|DR379463.1|DR379463
EST:     CGCTGATAGTTCTCACCTGCGTGATAACCCAAATGAACTATCTAAACAAG                         GCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATG
genomic: CGCTGATAGTTCTCACCTGCGTGATAACCCAAATGAACTATCTAAACAAGgtatagaggt ... ttgattacagGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaacatatcatgaaatttcattcggcttctctttttgttttcttgattacagGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAG
                  tttcattcggcttctc  CT-rich tract
       atatcatgaaattt  TA-rich tract