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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcttgagagttttggtatttgtatattatataattccatgtgaagtcattcaaacgaatctatatctctaatgtagGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCATCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGAT

Basic information

species Arabidopsis thaliana
transcript AT1G32850.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32850.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G36020.1 (Glycine max), 3'ss of exon 7
------------------------------------gtaagagcttgagagttttggtatttgtatattata--taattccatgtgaagtca-ttcaaacgaatct--------------atatctctaatgtagGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCATCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGAT
                                       || | |  | |||||    | | |  ||  ||   |  ||   | ||||| || || |||  ||| |               | |||   ||| |||||||| | ||| |||||||||||||  | ||||||||||||||||| || || | || | |  |||| || || || || ||||  |||||||| ||||
gtacgtgaccatttccattggcttatatgtattttttctagtgttcaacagtttataaaatggcgtaccatgattgctttactttgaaggcaatttaaattaattttgaaattgtaactagtgtctgatatgcagGGTGAGTTAGCACTTGCATTTGGTGACTTGTTGAGGAAATTGTGGTCTTCAGGGCGAACTGCTATTGCACCCCGTGCATTCAAGAGCAAATTGGCCCGAT

upper sequence: AT1G32850.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv02s0025g02760.t01 (Vitis vinifera), 3'ss of exon 7
------------------------------------------------------------gtaagagcttgagagttttggtatttgtatattatataattccatgtgaagtcattcaaacgaatctatatctctaatgtagGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCATCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGAT
                                                            ||| || |   ||||        |||   | ||| ||   | |  || ||||  ||| ||   ||| ||        || |||||||||||||| |||| ||||||||| | ||||||||||| ||||| ||||| |  |   ||||||| || || || ||||||  |||| | |||||||
gtatgaggctatccttatttttcatcctttctactattctgtccaggttttttttttcttgtatgacc---agaggggaatcctttacttctta-atcccttcgcgtaaagt--ttctaat--atccattgtagctgtgcagGGTGAGCTTGCATTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCCTCTGGCCGGACACCAGTTGCACCTCGTGCATTTAAGGGAAAACTTGCTCGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattatataattccatgtgaagtcattcaaacgaatctatatctctaatgtagGGTGAGCTTGCAATTGCATTTGGTGAACTTTTGAGGAAATTGTGGTCATCTGGACAAAATACAGTTGCGCCGCGCGCTTTTAAGACAAAATTGGCTCGAT
                                            ctctaat  putative branch site (score: 3)
                                         tatctct  CT-rich tract
     tatataatt  TA-rich tract