1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgttatgaatgatgagatacattggtcaatatcactcaataggaagaaaatgtaaactgtttttaaagaatgccttagaaagtgtttggttttggtgttaatgtgtttgttgaaccatatggtaatgttttcagGTGTGAGATGAAGTACATTTTGCTAGAGATGGACAGGATCTTGCGGCCGAGTGGATATGTTATAATCCGAGAATCGAGTTATTTCATGGACGCAATCACA
species | Arabidopsis thaliana |
transcript | AT1G31850.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAG GTGTGAGATGAAGTACATTTTGCTAGAGATGGACAGGATCTTGCGGCCGAGEST: gi|86064117|gb|DR359874.1|DR359874
genomic: ACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAGgtacgttatg ... atgttttcagGTGTGAGATGAAGTACATTTTGCTAGAGATGGACAGGATCTTGCGGCCGAG
EST: ACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAG GTGTGAGATGAAGTACAEST: gi|86064120|gb|DR359877.1|DR359877
genomic: ACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAGgtacgttatg ... atgttttcagGTGTGAGATGAAGTACA
EST: ACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAG GTGTGAGATGAAGTACATTTTGCTAGAGATTGGACAGGATCTTGCGGCC
genomic: ACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAGgtacgttatg ... atgttttcagGTGTGAGATGAAGTACATTTTGCTAGAGAT-GGACAGGATCTTGCGGCC
aagtgtttggttttggtgttaatgtgtttgttgaaccatatggtaatgttttcagGTGTGAGATGAAGTACATTTTGCTAGAGATGGACAGGATCTTGCGGCCGAGTGGATATGTTATAATCCGAGAATCGAGTTATTTCATGGACGCAATCACA
tgttaat putative branch site (score: 3)
tgttttc putative PPT
taatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttatgaatgatgagatacattggtcaatatcactcaataggaagaaaatgtaaactgtttttaaagaatgccttagaaagtgtttggttttggtgttaatgtgtttgttgaaccatatggtaatgttttcagGTGTGAGATGAAGTACATTTTGCTAGAGATGGACAGGATCTTGCGGCCGAGTGGATATGTTATAATCCGAGAATCGAGTTATTTCATGGACGCAATCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA