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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttactaaattttgattctgttttttactatcatacatatgttctattcaaaccgttgctgatgctgatccgagatttttacagCGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTAGGGGGATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTG

Basic information

species Arabidopsis thaliana
transcript AT1G31070.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125207212|gb|EL222166.1|EL222166
EST:     TCTAGCTAAAGCTCCAGATGGTAACGGCGGAGTCTATGCAG                         CGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTAGGGGGATTAAAT
genomic: TCTAGCTAAAGCTCCAGATGGTAACGGCGGAGTCTATGCAGgtacgtttac ... atttttacagCGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTAGGGGGATTAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatacatatgttctattcaaaccgttgctgatgctgatccgagatttttacagCGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTAGGGGGATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTG
                                 tgctgat  putative branch site (score: 3)
                                              tttttac  putative PPT
                                           agattttta  TA-rich tract