1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcactgccttggggaaccaaaacaatacgcacttaactctttcaaaataaagcatccaacttcttaactcaacaccaagtttgtttcttttggtttgcagATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTTTTAGAATTTGGCACCAAACCAAACCAGCGTCA
species | Arabidopsis thaliana |
transcript | AT1G30970.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAG ATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTT
genomic: AAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctg ... tggtttgcagATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTT
aataaagcatccaacttcttaactcaacaccaagtttgtttcttttggtttgcagATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTTTTAGAATTTGGCACCAAACCAAACCAGCGTCA
tcttaac putative branch site (score: 2)
tttgtttctttt putative PPT
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactgccttggggaaccaaaacaatacgcacttaactctttcaaaataaagcatccaacttcttaactcaacaccaagtttgtttcttttggtttgcagATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTTTTAGAATTTGGCACCAAACCAAACCAGCGTCA
- - - - - - - - ccaaaac
- - - - - - - - - - - - - - - acttaac
- - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccaa