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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgctgtaggatctgaatttgatttgttctcggtagtagtctctcagaattatggaacatttttagatatttggtcttaacttgattgtgtaaagtgtttgtgattctgtaaaatattttgtcgttcgtgttgcttgattcttaaaatgactaattggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGTGACA

Basic information

species Arabidopsis thaliana
transcript AT1G29970.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125060677|gb|EL129354.1|EL129354
EST:     AGTAATGGACAGATGCTAGCCATCAACGAG                         ATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA
genomic: AGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA
EST: gi|164182186|gb|ES085043.1|ES085043
EST:     GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAG                         ATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGG
genomic: GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGG
EST: gi|164003393|gb|ES191756.1|ES191756
EST:     GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAG                         ATCTT-GAGAAGAACCCAACAACGATCAAGAATTT
genomic: GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTT
EST: gi|125137715|gb|EL177508.1|EL177508
EST:     TGCTAGCCATCAACGAG                         ATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA
genomic: TGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattttgtcgttcgtgttgcttgattcttaaaatgactaattggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGTGACA
                                     gactaat  putative branch site (score: 2)
                              ttaaaatgactaatt  TA-rich tract