1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attgagtttggaattaggtagtggcctgaacgaagagatgtgctgctattgattttagcggttgattaaaaataattggatgttttcattatggtgacagAGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCAATACC
species | Arabidopsis thaliana |
transcript | AT1G27630.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGAGATTGGTGGTTGGAGTTTGGAGTTACAACTAAGCTATTAAAAG AGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATAEST: gi|86079482|gb|DR375239.1|DR375239
genomic: CAGGAGAGATTGGTGGTTGGAGTTTGGAGTTACAACTAAGCTATTAAAAGgtttgctgtt ... atggtgacagAGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATA
EST: CAGGAGAGATTGGTGGTTGGAGTTTGGAGTTACAACTAAGCTATTAAAAG AGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATA
genomic: CAGGAGAGATTGGTGGTTGGAGTTTGGAGTTACAACTAAGCTATTAAAAGgtttgctgtt ... atggtgacagAGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATA
ctattgattttagcggttgattaaaaataattggatgttttcattatggtgacagAGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCAATACC
attaaaaataattgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgagtttggaattaggtagtggcctgaacgaagagatgtgctgctattgattttagcggttgattaaaaataattggatgttttcattatggtgacagAGGTAATCCAGGAGATGTGCACACTGATAGAAGTGGACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCAATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - agtttgg
- - - - - - - - - - - - - - - -gaagaga
- - - - - - - - - - - - - - - - - - - - - ctgctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa