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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaatgatcccaacgcctctctgaatatcttcaaatacttatatttcatcttcatcactgatctcacataatttttgttgggttcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCTATAACATAGACAGTCTATTTGTGCTCACTTGTGTTACCCTTAATACTTT

Basic information

species Arabidopsis thaliana
transcript AT1G27400.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124921521|gb|EH995130.1|EH995130
EST:     GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAG
genomic: GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAG
EST: gi|47827860|gb|CK117544.1|CK117544
EST:     GCCACATTGAGTTGATTNTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGTCTCATC
genomic: GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATC
EST: gi|124742356|gb|EH833518.1|EH833518
EST:     GATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAAGAAAGGAGCCTCATCTTAAGC
genomic: GATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAA-GAAAGGAGCCTCATCTTAAGC
EST: gi|164175725|gb|ES163433.1|ES163433
EST:     AAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGTCTCATCTTAAGC
genomic: AAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGC
EST: gi|86074318|gb|DR370075.1|DR370075
EST:     GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCT
genomic: GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCT
EST: gi|124761331|gb|EH851461.1|EH851461
EST:     CCACATTGAGTTGATTTTGTCACGAGAAAGAAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAA
genomic: CCACATTGAGTTGATTTTGTCA-GAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAA
EST: gi|164221496|gb|ES123118.1|ES123118
EST:     CTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGTCTCATCTTAAGCT
genomic: CTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCT
EST: gi|124931215|gb|EL008592.1|EL008592
EST:     GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAG
genomic: GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAG
EST: gi|116444090|gb|EG486682.1|EG486682
EST:     GCCACATTGGGTTGATTTTGTCAGAGAAAGAAGAGCCCGTGAAGAAAGAG                         CCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCT
genomic: GCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGgtaatttaat ... tcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatttcatcttcatcactgatctcacataatttttgttgggttcttgcacagCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCTATAACATAGACAGTCTATTTGTGCTCACTTGTGTTACCCTTAATACTTT
                      atctcac  putative branch site (score: 3)
                                            ttcttgc  putative PPT
                           acataatttttgtt  TA-rich tract