1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctgtcgtctcaccatcttaatattcctctttctcatactcacttttgctatctatattaatccaaaaacttatttcttcttcttattttaatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG
species | Arabidopsis thaliana |
transcript | AT1G25260.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAG GTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACEST: gi|86050068|gb|DR345823.1|DR345823
genomic: GATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAGgtctgtcgtc ... taatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAAC
EST: GATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAG GTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACEST: gi|164121943|gb|ES162018.1|ES162018
genomic: GATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAGgtctgtcgtc ... taatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAAC
EST: GACTAAACAAAG GTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACEST: gi|125065989|gb|EL133020.1|EL133020
genomic: GACTAAACAAAGgtctgtcgtc ... taatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAAC
EST: TGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAAACAAAAG GTACTGTGGAGTTGGTCGEST: gi|164093297|gb|ES059592.1|ES059592
genomic: TGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAA-CAAA-Ggtctgtcgtc ... taatatgtagGTACTGTGGAGTTGGTCG
EST: GATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAG GTACTGTGGAGTTGGTCGCTGACTTCGTAGT
genomic: GATGGAACCACTTCTTCGGAAGCTTGAAATGCCTGTACGACTAAACAAAGgtctgtcgtc ... taatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGT
tttgctatctatattaatccaaaaacttatttcttcttcttattttaatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG
cttatttcttcttctt CT-rich tract
aaaaacttatttcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtcgtctcaccatcttaatattcctctttctcatactcacttttgctatctatattaatccaaaaacttatttcttcttcttattttaatatgtagGTACTGTGGAGTTGGTCGCTGACTTTGTAGTTTGTGAAGAAGGAAAACAACTTTCGCCAAAATCAGCCCACATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA