Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctcatttcttctcttcttttccacacatttgttatccaaaattagttcttaaaacaaacttccatggtgatgtgttgtacagAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATCTGCTTCTTCTATTCAAGTTGTTTTCCGCTGTAATCCGGTTTTAAGTAGT

Basic information

species Arabidopsis thaliana
transcript AT1G21720.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G21720.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 6
------------gtaagttctcatttct-tctcttcttttccacacatttgttatccaaaattagttcttaaaacaaacttccatggtgatgtgttg-tacagAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATCTGCTTCTTCTATTCAAGTTGTT--TTCCGCTGTA-ATCCGGTTTTAAGTAGT
             |||| |  ||  |   | | || ||||| |||  ||| || |   |   | ||   |       | ||  ||     | | ||| ||||| |||||||| ||  | |||||||||||| |||| ||||||||||||||| ||   ||  |    |   | |||  | ||  | || ||| |  |||   |   
tagttcacattaataagatagcagatgggtatattattttcaacattttttttttttta---tggtcaattggttccattttaatctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTTCTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076686|gb|DR372443.1|DR372443
EST:     TCTGTTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGT                         AACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATC
genomic: TCTGTTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGTgtaagttctc ... tgttgtacagAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATC
EST: gi|125072021|gb|EL136861.1|EL136861
EST:     CGTGATTGTCTGAGTGGTTGGGGAGGGGCATGTTTACATTGT                         AACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATC
genomic: CGTGATTGTCTGAGTGGTTGGGGA-GGGCATGTTTACATTGTgtaagttctc ... tgttgtacagAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttatccaaaattagttcttaaaacaaacttccatggtgatgtgttgtacagAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATCTGCTTCTTCTATTCAAGTTGTTTTCCGCTGTAATCCGGTTTTAAGTAGT
          aaaattagttcttaaa  TA-rich tract