1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtaacttctggcatagaaatgcatcttccattcattttttcaaaaagttgtcccgaaactcgttatccattactagtatctcacttccatctgttttaaacttttactaaatctgctatgaatggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTTAGATGCAAG
species | Arabidopsis thaliana |
transcript | AT1G19660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAG GTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAEST: gi|152034732|gb|BP835572.2|BP835572
genomic: TTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaact ... ggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
EST: CGAGGCATATTTCGCAGAGTTATACCTTTCAAAG GTGGGGGATAAGTCGGATGGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAEST: gi|125322519|gb|EL336604.1|EL336604
genomic: CGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaact ... ggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
EST: ACGAGGCATATTTCGCAGAGTTATACCTTTCAAAG GTGGGGAATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
genomic: ACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaact ... ggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
tctcacttccatctgttttaaacttttactaaatctgctatgaatggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTTAGATGCAAG
tactaaa putative branch site (score: 1)
tgttttaaacttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaacttctggcatagaaatgcatcttccattcattttttcaaaaagttgtcccgaaactcgttatccattactagtatctcacttccatctgttttaaacttttactaaatctgctatgaatggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTTAGATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT