1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattgatgtttcttcatcccctgcaatgatctactcagggtttcttttaccctttctcttgagtccatgaaatactcttaagctctggattgtgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGGTAACTTTAGGGTCGAAAGGGTGCATTGCAAAA
species | Arabidopsis thaliana |
transcript | AT1G19600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGAAGCAGCAGAGCTCCTTAG GGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTTCCTAGGCAGACEST: gi|124713099|gb|EH804501.1|EH804501
genomic: CGAAGCAGCAGAGCTCCTTAGgtaattgatg ... tgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTT-CCTAGGCAGAC
EST: AACGAGGACGAAGCAGCAGAGCTCCTTAG GGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACAEST: gi|124834946|gb|EH919385.1|EH919385
genomic: AACGAGGACGAAGCAGCAGAGCTCCTTAGgtaattgatg ... tgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACA
EST: AGGACGAAGCAGCAGAGCTCCTTAG GGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACAEST: gi|86075950|gb|DR371707.1|DR371707
genomic: AGGACGAAGCAGCAGAGCTCCTTAGgtaattgatg ... tgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACA
EST: AACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAG GGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACAEST: gi|125000919|gb|EL073188.1|EL073188
genomic: AACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAGgtaattgatg ... tgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACA
EST: CATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAG GGGTGAGCAAGAAGCGGGTCCGGEST: gi|124770515|gb|EH860645.1|EH860645
genomic: CATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAGgtaattgatg ... tgagtttcagGGGTGAGCAAGAAGCGGGTCCGG
EST: CGAAGCAGCAGAGCTCCTTAG GGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTTCCTAGGCAGAC
genomic: CGAAGCAGCAGAGCTCCTTAGgtaattgatg ... tgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTT-CCTAGGCAGAC
taccctttctcttgagtccatgaaatactcttaagctctggattgtgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGGTAACTTTAGGGTCGAAAGGGTGCATTGCAAAA
atgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgatgtttcttcatcccctgcaatgatctactcagggtttcttttaccctttctcttgagtccatgaaatactcttaagctctggattgtgagtttcagGGGTGAGCAAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGGTAACTTTAGGGTCGAAAGGGTGCATTGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG