1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taataacgcttacataaattcattttttttttctcccactttctgcttttgcttctcaattagcttttgcttgtgggctgactgtattttgctgtttcagCTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGGCATTGTAATCGAGGCTGGACTTGATAAAGCAAAAGGACCATTTGCGACGTTCATTGTTC
species | Arabidopsis thaliana |
transcript | AT1G17220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGAAAAGTGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAG CTTCAAGAGTTGAAAGCAAAEST: gi|47831587|gb|CK121271.1|CK121271
genomic: GGGAAAA-TGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAGgttagtttgt ... gctgtttcagCTTCAAGAGTTGAAAGCAAA
EST: AAGGGGAAAATGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAG CTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGGCATTGEST: gi|124783950|gb|EH873730.1|EH873730
genomic: AAGGGGAAAATGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAGgttagtttgt ... gctgtttcagCTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGGCATTG
EST: GGGAAAATGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAG CTTCAAGAGTTGAAAGCAAAEST: gi|124836171|gb|EH920610.1|EH920610
genomic: GGGAAAATGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAGgttagtttgt ... gctgtttcagCTTCAAGAGTTGAAAGCAAA
EST: AAGGGGAAAATGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAG CTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGG
genomic: AAGGGGAAAATGTCGATGATCTGTTGGAAACTGTCATGCTTGTTGCAGAGgttagtttgt ... gctgtttcagCTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGG
cttttgcttctcaattagcttttgcttgtgggctgactgtattttgctgtttcagCTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGGCATTGTAATCGAGGCTGGACTTGATAAAGCAAAAGGACCATTTGCGACGTTCATTGTTC
ggctgac putative branch site (score: 3)
ttttgct putative PPT
tgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataacgcttacataaattcattttttttttctcccactttctgcttttgcttctcaattagcttttgcttgtgggctgactgtattttgctgtttcagCTTCAAGAGTTGAAAGCAAATCCACACAGAAATGCCAAGGGCATTGTAATCGAGGCTGGACTTGATAAAGCAAAAGGACCATTTGCGACGTTCATTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - -acataaa
- - - - - - - - - - - - - - - - ctcccac
- - - - - - - - - - - - - - - - - - - - - - gcttttg