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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctgacaaaaaaaaccttctcctatactttgcctccttatattgcaagataaggattcattcggaaactcgaatcaaacctgaactgaaacatatattctaaatccctatattgaaaccttgttgtgtgagtgtttgagagttgcttctaagtatcataacgtatttcctttcaatgaaaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTTTCATACTCATACGCATTCTTCCACATCATCTT

Basic information

species Arabidopsis thaliana
transcript AT1G16180.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125024156|gb|EL096425.1|EL096425
EST:     TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAG                         AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG
genomic: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG
EST: gi|164164101|gb|ES020280.1|ES020280
EST:     TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAG                         AGAAGCCTCTGCTTCCG
genomic: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCG
EST: gi|163989103|gb|ES050060.1|ES050060
EST:     CTCTCCCCTCCTGATTCTCCTCGCGCAG                         AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAG
genomic: CTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAG
EST: gi|125034397|gb|EL106666.1|EL106666
EST:     TGATTCTCCTCGCGCAG                         AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAG
genomic: TGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAG
EST: gi|125211009|gb|EL225963.1|EL225963
EST:     TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAG                         AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG
genomic: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagagttgcttctaagtatcataacgtatttcctttcaatgaaaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTTTCATACTCATACGCATTCTTCCACATCATCTT
                     tcataac  putative branch site (score: 2)
                                                ttttc  putative PPT
                                    tttcaatgaaaatttt  TA-rich tract