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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcattacaatctcaacatgtgtttatgatttaccgacatgtaagaataatctatatgatgtacataactgaatttcacagGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACG

Basic information

species Arabidopsis thaliana
transcript AT1G14520.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124877471|gb|EH956908.1|EH956908
EST:     GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTT                         GTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTT
genomic: GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTgtaagttcat ... aatttcacagGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTT
EST: gi|164163926|gb|ES196659.1|ES196659
EST:     GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTT                         GTTGCGAAGGAG
genomic: GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTgtaagttcat ... aatttcacagGTTGCGAAGGAG
EST: gi|164234871|gb|ES038628.1|ES038628
EST:     GATTACATGTACCTT                         GTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATC
genomic: GATTACATGTACCTTgtaagttcat ... aatttcacagGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttaccgacatgtaagaataatctatatgatgtacataactgaatttcacagGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACG
                                    acataac  putative branch site (score: 3)
               taagaataatctatat  TA-rich tract