1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaatttgttgacttgctaggtttattgaatagaccagtggtaacactactggtttgacgtaccgtgattttaatcaatttatcctaacttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACACCGTCACTCTCTTTACTCGTGTCGCAGATAATTTCAGGATTGCTGCTC
species | Arabidopsis thaliana |
transcript | AT1G12840.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTGACCGATTATGTG GTTCCTAGATCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACEST: gi|124747235|gb|EH837381.1|EH837381
genomic: CTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
EST: ATTCCCAAAAAGACTGGCTAGCATGTTATGAGATTTTGACCGATTATGTG GTTCCTAGGTCCTCGAAEST: gi|163969987|gb|ES157323.1|ES157323
genomic: ATTCCCAAAAAGACTGGCTAGCATGTTATGAGACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAA
EST: GACTTTGACCGATTATGTG GTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACEST: gi|124766774|gb|EH856904.1|EH856904
genomic: GACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
EST: CATGTTATGAGACTTTGACCGATTATGTG GTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACEST: gi|164202287|gb|ES129505.1|ES129505
genomic: CATGTTATGAGACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
EST: ATGAGACTTTGACCGATTATGTG GTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTANTGCCCTTTA
genomic: ATGAGACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTA-TGCCCTTTA
acactactggtttgacgtaccgtgattttaatcaatttatcctaacttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACACCGTCACTCTCTTTACTCGTGTCGCAGATAATTTCAGGATTGCTGCTC
tcctaac putative branch site (score: 1)
cttgtttc CT-rich tract
attttaatcaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttgttgacttgctaggtttattgaatagaccagtggtaacactactggtttgacgtaccgtgattttaatcaatttatcctaacttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACACCGTCACTCTCTTTACTCGTGTCGCAGATAATTTCAGGATTGCTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT